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#annotates indels from VCFs with VNTR information.
#annotates indels from VCFs with VNTR information.
vt annotate_indels in.vcf -r hs37d5.fa -o annotated.sites.vcf
vt annotate_indels in.vcf -r hs37d5.fa -o annotated.sites.vcf
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* Example 01
* Example 02
* Example 03
* Example 04
* Example 05
* Example 06
* Example 07
* Example 08
* Example 09
* Example 10
* Example 11
* Example 12
* Example 13
* Example 14
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20 82079 . G A 1255.98 . NSAMPLES=1;E=43;N=51;ESUM=43;NSUM=51;FLANKSEQ=GGAGCACGCC[G/A]CCATGCCCGG
20 82079 . G A 1255.98 . NSAMPLES=1;E=43;N=51;ESUM=43;NSUM=51;FLANKSEQ=GGAGCACGCC[G/A]CCATGCCCGG
20 100699 . C T 809.09 . NSAMPLES=1;E=28;N=61;ESUM=28;NSUM=61;FLANKSEQ=GGTGAAAAAT[C/T]ACCTGTCAGT
20 100699 . C T 809.09 . NSAMPLES=1;E=28;N=61;ESUM=28;NSUM=61;FLANKSEQ=GGTGAAAAAT[C/T]ACCTGTCAGT
20 101362 . G A 1087.13 . NSAMPLES=1;E=36;N=67;ESUM=36;NSUM=67;FLANKSEQ=TAATACTGAA[G/A]TTTACTTCTC
20 101362 . G A 1087.13 . NSAMPLES=1;E=36;N=67;ESUM=36;NSUM=67;FLANKSEQ=TAATACTGAA[G/A]TTTACTTCTC
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The following shows the trace of how the algorithm works
The following shows the trace of how the algorithm works
