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21 bytes removed
, 15:53, 25 November 2015
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− | === Discover2 === | + | === Discover === |
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| Discovers variants from reads in a BAM/CRAM file. | | Discovers variants from reads in a BAM/CRAM file. |
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| <div class=" mw-collapsible mw-collapsed"> | | <div class=" mw-collapsible mw-collapsed"> |
| #discover variants from NA12878.bam and write to stdout | | #discover variants from NA12878.bam and write to stdout |
− | vt discover2 -b NA12878.bam -s NA12878 -r hs37d5.fa -i 20 -v snps,indels,mnps | + | vt discover -b NA12878.bam -s NA12878 -r hs37d5.fa -i 20 |
| <div class="mw-collapsible-content"> | | <div class="mw-collapsible-content"> |
| usage : vt discover2 [options] | | usage : vt discover2 [options] |