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#level -1 denotes an uncompressed BCF file that is not encapsulated in bgzf blocks and
#level -1 denotes an uncompressed BCF file that is not encapsulated in bgzf blocks and
#are thus not indexable but are highly suitable for streaming between vt commands.
#are thus not indexable but are highly suitable for streaming between vt commands.
vt view -h mills.bcf -c 1 -o c1-mills.bcf
vt view -h mills.bcf -c 1 -o c1-mills.bcf
#views mills.bcf and selects variants that overlap with the regions found in dust.bed from chromosome 20
#views mills.bcf and selects variants that overlap with the regions found in dust.bed from chromosome 20
