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Vt (view source)

Revision as of 17:10, 10 February 2016

96 bytes added ,  17:10, 10 February 2016
→‎Filters
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   Variant characteristics
 
   Variant characteristics
−
     VTYPE,N_ALLELE,DLEN,LEN
+
     VTYPE,N_ALLELE,DLEN,LEN,VARIANT_CONTAINS_N
    
   Variant value types
 
   Variant value types
 
     SNP,MNP,INDEL,CLUMPED
 
     SNP,MNP,INDEL,CLUMPED
   −
   Biallelic SNPs only                       : VTYPE==SNP&&N_ALLELE==2
+
   Biallelic SNPs only                         : VTYPE==SNP&&N_ALLELE==2
−
   Biallelic Indels with embedded SNP       : VTYPE==(SNP|INDEL)&&N_ALLELE==2
+
   Biallelic Indels with embedded SNP         : VTYPE==(SNP|INDEL)&&N_ALLELE==2
−
   Biallelic variants involving insertions   : VTYPE&INDEL&&DLEN>0&&N_ALLELE==2
+
   Biallelic variants involving insertions     : VTYPE&INDEL&&DLEN>0&&N_ALLELE==2
−
   Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2
+
   Biallelic variants involving 1bp variants   : LEN==1&&N_ALLELE==2
 +
  Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N
    
   QUAL field
 
   QUAL field
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Retrieved from "http://genome.sph.umich.edu/wiki/Special:MobileDiff/14085"

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