1,102
edits
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profile_vntrs v0.5
profile_vntrs v0.5
no VNTRs 5660874
no VNTRs 5660874 #number of VNTRs in vntrs.sites.bcf
no low complexity 2686460 (47.46%)
no low complexity 2686460 (47.46%) #number of VNTRs in low complexity region determined by MDUST
no coding 17911 (0.32%)
no coding 17911 (0.32%) #number of VNTRs in coding regions determined by GENCODE v7
no redundant 1312209 (23.18%) <br>
no redundant 1312209 (23.18%) #number of VNTRs involved in overlapping with one another<br>
trf_lobstr (1638516)
trf_lobstr (1638516) #TRF based reference set used in lobSTR, motif lengths 1 to 6.
A-B 3269285
A-B 3269285
A-B~ 1666185
A-B~ 1666185
B-A~ 710075
B-A~ 710075
B-A 205246 <br>
B-A 205246 <br>
trf_repeatseq (1624553)
trf_repeatseq (1624553) #TRF based reference set used in repeatseq, motif lengths 1 to 6.
A-B 3291652
A-B 3291652
A-B~ 1650190
A-B~ 1650190
B-A~ 703948
B-A~ 703948
B-A 203767 <br>
B-A 203767 <br>
trf_vntrseek (230306)
trf_vntrseek (230306) #TRF based reference set used in vntrseek, motif lengths 7 to 2000.
A-B 5384453
A-B 5384453
A-B~ 271302
A-B~ 271302
B-A~ 92496
B-A~ 92496
B-A 132837 <br>
B-A 132837 <br>
codis+ (15)
codis+ (15) #CODIS STRs + 2 STRs from PROMEGA
A-B 5660794
A-B 5660794
A-B~ 79
A-B~ 79
