From Genome Analysis Wiki
Jump to navigationJump to search
16 bytes added
, 19:10, 19 March 2016
Line 388: |
Line 388: |
| -d debug [false] | | -d debug [false] |
| -q do not print options and summary [false] | | -q do not print options and summary [false] |
− | -m exits when REF is inconsistent with | + | -m warns but does not exit when REF is inconsistent |
− | unmasked reference sequence for non SNPs. | + | with masked reference sequence for non SNPs. |
| This overides the -n option [false] | | This overides the -n option [false] |
| -n warns but does not exit when REF is inconsistent | | -n warns but does not exit when REF is inconsistent |