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105 bytes added
, 17:02, 27 December 2016
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| Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2 | | Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2 |
| Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N | | Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N |
| + | |
| + | REF field |
| + | REF |
| + | |
| + | ALT field |
| + | ALT |
| | | |
| QUAL field | | QUAL field |
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| INFO fields | | INFO fields |
| INFO.<tag> | | INFO.<tag> |
− | | + | |
| + | Alternative allele is AC : ALT=='AC' |
| Passed biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2 | | Passed biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2 |
| Passed Common biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2&&INFO.AF>0.005 | | Passed Common biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2&&INFO.AF>0.005 |