1,102
edits
Changes
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Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2
Biallelic variants involving 1bp variants : LEN==1&&N_ALLELE==2
Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N
Variants with explicit sequences with no Ns : ~VARIANT_CONTAINS_N
REF field
REF
ALT field
ALT
QUAL field
QUAL field
INFO fields
INFO fields
INFO.<tag>
INFO.<tag>
Alternative allele is AC : ALT=='AC'
Passed biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2
Passed biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2
Passed Common biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2&&INFO.AF>0.005
Passed Common biallelic SNPs only : PASS&&VTYPE==SNP&&N_ALLELE==2&&INFO.AF>0.005
