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, 22:48, 6 April 2017
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| This allows you to only analyse biallelic indels that are passed on chromosome 20. | | This allows you to only analyse biallelic indels that are passed on chromosome 20. |
| vt profile_na12878 vt.bcf -g na12878.reference.txt -r genome.fa -f "N_ALLELE==2&&VTYPE==INDEL&&PASS" -i 20 | | vt profile_na12878 vt.bcf -g na12878.reference.txt -r genome.fa -f "N_ALLELE==2&&VTYPE==INDEL&&PASS" -i 20 |
| + | |
| + | This allows you to extract biallelic indels that are passed on chromosome 20. |
| + | vt view vt.bcf -g na12878.reference.txt -r genome.fa -f "N_ALLELE==2&&VTYPE==INDEL&&PASS" -i 20 |
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| Other examples of filters | | Other examples of filters |