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* Internal : /net/fantasia/home/atks/ref/vt/grch38
* Internal : /net/fantasia/home/atks/ref/vt/grch38
{| class="wikitable"
|-
! scope="col"| data set
! scope="col"| samples
! scope="col"| snps/indels/complex/sv
! scope="col"| description
|-
|1000G.v5 <br>
dbsnp138 <br>
1000G.omni.chip <br>
mills <br>
mills.chip <br>
affy.exome.chip <br>
NA12878.broad.kb <br>
NA12878.v7.illumina.platinum <br>
mdust.bed.gz <br>
gencode.cds.bed.gz <br>
trf.bed.gz
| 0<br>
0<br>
2141<br>
0<br>
158<br>
2122<br>
1<br>
1 <br>
NA <br>
NA <br>
NA
| 81316694/3296894/66806/59426 <br>
10588965/2488793/69749/0 <br>
2432554/5/0/0 <br>
0/208753/0/0 <br>
0/8904/0/0 <br>
281875/34389/0/0 <br>
281345/87389/152/0 <br>
3702969/650764/13751/0 <br>
NA<br>
NA<br>
NA
|1000G v5. [1000G 2015]<br>
derived from GATK's resource bundle that excludes 1000G variants.<br>
1000G individuals typed on the omni chip [1000G 2015]<br>
indels from [Mills 2006]<br>
indels from [Mills 2011]<br>
1000G individuals and others typed on the affymetrix exome chip [1000G 2015]<br>
from GATK's NA12878 knowledgebase.<br>
Illumina's platinum genomes version 7<br>
regions of low complexity annotated using mdust [Morgulis 2006]<br>
coding sequence regions based on GENCODE v19 annotations [Harrow 2012]<br>
tandem repeat finder STRs from lobSTR's resource bundle [Gymrek 2012]
|}
Note: Please let me know if I did not cite a resource properly.
Note: Please let me know if I did not cite a resource properly.
