1,102
edits
Changes
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ceu NA12878,NA12878A NA12891 NA12892 0
ceu NA12878,NA12878A NA12891 NA12892 0
yri NA19240 NA19239 NA19238 0
yri NA19240 NA19239 NA19238 0
= Pedigree File =
vt understands an augmented version introduced by [hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink].
The pedigree file format is as follows with the following mandatory fields:
{| class="wikitable"
|-
! scope="col"| Field
! scope="col"| Description
! scope="col"| Valid Values
|-
|Family ID<br>
Individual ID<br>
Paternal ID<br>
Maternal ID<br>
Sex<br>
Phenotype
|ID of this family <br>
ID of this individual <br>
ID of the father <br>
ID of the mother <br>
Sex of the individual. <br>
Phenotype.
|[A-Za-z_]+<br>
[A-Za-z_]+ <br>
[A-Za-z_]+ <br>
[A-Za-z_]+<br>
1 = male, 2 = female and other = alternative<br>
[A-Za-z_]+
|}
Family ID
Individual ID
Paternal ID
Maternal ID
Sex (1=male; 2=female; other=unknown)
Phenotype
ceu NA12878 NA12891 NA12892 female
yri NA19240 NA19239 NA19238 female
ceu NA12878,NA12878A NA12891 NA12892 female
yri NA19240 NA19239 NA19238 female
ceu NA12878,NA12878A NA12891 NA12892 0
yri NA19240 NA19239 NA19238 0
= Resource Bundle =
= Resource Bundle =
