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edits
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= Pedigree File =
= Pedigree File =
vt understands an augmented version introduced by [hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink].
vt understands an augmented version introduced by [mailto:hmkang@umich.edu Hyun] of the PED described by [http://zzz.bwh.harvard.edu/plink/data.shtml#ped plink].
The pedigree file format is as follows with the following mandatory fields:
The pedigree file format is as follows with the following mandatory fields:
Phenotype
Phenotype
|ID of this family <br>
|ID of this family <br>
ID of this individual <br>
ID(s) of this individual (comma separated) <br>
ID of the father <br>
ID of the father <br>
ID of the mother <br>
ID of the mother <br>
Sex of the individual. <br>
Sex of the individual<br>
Phenotype.
Phenotype
|[A-Za-z_]+<br>
|[A-Za-z_]+<br>
[A-Za-z_]+ <br>
[A-Za-z_]+(,[A-Za-z_]+)* <br>
[A-Za-z_]+ <br>
[A-Za-z_]+ <br>
[A-Za-z_]+<br>
[A-Za-z_]+<br>
1 = male, 2 = female and other = alternative<br>
1=male, 2=female, other=alternative, male, female<br>
[A-Za-z_]+
[A-Za-z_]+
|}
|}
Examples:
ceu NA12878 NA12891 NA12892 female
ceu NA12878 NA12891 NA12892 female
yri NA19240 NA19239 NA19238 female
yri NA19240 NA19239 NA19238 female
ceu NA12878 NA12891 NA12892 2
yri NA19240 NA19239 NA19238 2
ceu NA12878,NA12878A NA12891 NA12892 female
ceu NA12878,NA12878A NA12891 NA12892 female
yri NA19240 NA19239 NA19238 female
yri NA19240 NA19239 NA19238 female
= Resource Bundle =
= Resource Bundle =
