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→BaseQC (--pBaseQC and --cBaseQC and --baseSum)
+11
→BaseQC (--pBaseQC and --cBaseQC and --baseSum)
+29
→Parameters
+479
23 September 2014
6 January 2014
30 May 2012
18 May 2012
2 May 2012
26 January 2012
23 January 2012
19 January 2012
7 October 2011
Q20Pct also excludes Mapping Quality 255
+17
depth and q20 exclude mapping quality 255
+68
Update usage
-23
add that deletions/skips are excluded from depth/q20 bases
+282
no edit summary
+89
Add links to output format
+100
Update Stats
+1,729
Update BaseQC outputs
+38