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=====Graphs=====
=====Graphs=====
* RMW generates QQ plot and Manhattan plots automatically. By using --labelHits option, users can choose whether to label the hits or not. Here is an example:
* RAREMETALWORKER generates QQ plot and Manhattan plots automatically, unless there are only trivial number of variants analyzed.
* RAREMETALWORKER automatically generates three stratified QQ plots, one with all variants, one with variants of maf<0.05, and one with variants of maf<0.01.
* RAREMETALWORKER stores plots of each trait in separate files named ''yourprefix.traitname.plots.pdf''.
* By using --labelHits option, users can choose to label the hits.
* Here is an example QQ plot and manhattan plot generated by RAREMETALWORKER.
{| border="1" cellpadding="5" cellspacing="0" align="center"
{| border="1" cellpadding="5" cellspacing="0" align="center"
