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=====Graphs=====
=====Graphs=====
* RAREMETALWORKER generates QQ plot and Manhattan plots automatically, unless there are only trivial number of variants analyzed.
* RAREMETALWORKER generates QQ plot and Manhattan plots automatically, unless there are only trivial number of variants analyzed.
* RAREMETALWORKER stores plots of each trait in separate files named ''yourprefix.traitname.plots.pdf''.
* RAREMETALWORKER stores plots for recessive and dominant results separated with files named ''yourprefix.traitname.recessive.plots.pdf'' and ''yourprefix.traitname.dominant.plots.pdf''.
* RAREMETALWORKER automatically generates three stratified QQ plots, one with all variants, one with variants of maf<0.05, and one with variants of maf<0.01.
* RAREMETALWORKER automatically generates three stratified QQ plots, one with all variants, one with variants of maf<0.05, and one with variants of maf<0.01.
* Genomic controls are automatically calculated and labeled in QQ plots.
* Genomic controls are automatically calculated and labeled in QQ plots.
* By using --labelHits option, users can choose to label the hits.
* By using --labelHits option, users can choose to label the hits.
* Here is an example QQ plot and manhattan plot generated by RAREMETALWORKER.
* Here is an example QQ plot and manhattan plot generated by RAREMETALWORKER.
