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Revision as of 12:47, 14 April 2014
, 12:47, 14 April 2014→VC Options
==VC Options==
==VC Options==
===--vcX===
* --vcX option has to be used with --kinPedigree (when pedigree kinship is used), or --kinGeno (when genomic relationship matrix is estimated), or --kinFile ( when GRM is read from a file).
* Using --vcX option let RAREMETALWORKER fit a linear mixed model to analyze chromosome X, using both autosomal kinship and chromosome X kinship.
===--separateX===
* --separateX option must be used with --vcX option.
* Using --separateX option requests RAREMETALWORKER to fit a linear mixed model using only chromosome X kinship for analyses of chromosome X markers.
Please refer to [[RAREMETALWORKER_method#ANALYZING_MARKERS_ON_CHROMOSOME_X| '''method''']] and [[RAREMETALWORKER_SPECIAL_TOPICS#Analyzing_Chromosome_X | '''technical details''']] for more explanation.
==Trait Options==
==Trait Options==
