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RAREMETALWORKER command reference

407 bytes added, 13:22, 14 April 2014
Kinship Options
==Kinship Options==
===--kinMaf===
* --kinMaf takes a value that specifies the MAF cutoff for variants to be used to estimate GRMs.* The default is 0.05, which means variants with MAF<0.05 are not used for estimating GRMs.
===--kinMiss===
* --kinMiss takes a value that specifies the missing genotype cutoff for variants to be used to estimate GRMs.
* The default is 0.05, which means variants with genotype call rate <0.95 are not used for estimating GRMs.
==Chromosome X==
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