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RAREMETAL DOWNLOAD & BUILD

424 bytes removed, 12:44, 14 March 2019
Release 4.15.0; simplify release notes to point to self-contained repository.
[[Category:RAREMETAL]]
[[Category:RAREMETALWORKER]]
== Useful Wiki Pages ==
== Where to Download ==* The [[RAREMETALWORKER | '''RAREMETALWORKER documentation''']]* The [[RAREMETAL_Documentation | '''RAREMETAL documentation''']]* The [[RAREMETAL FAQ | '''FAQ''']]* The [[RAREMETAL_Change_Log | '''Change Log''']]
We have tested our source code package on several platforms, including Linux/Ubuntu, Linux/Debian, Linux/RedHat, Linux/CentOS, Mac OS X 10.8, CygWIN64 and MinGW for Windows.===GitHub===
* The All source package for Linux can be downloaded herecode is available on GitHub: [[Media:LINUX_raremetal.0.4.9.tgz ‎|'''for Linux''']]
* The source package for Linux can be downloaded herehttps: [[Media:MAC_raremetal.0.4.9//github.tgz ‎|'''for MAC OS X''']]com/statgen/Raremetal
* The source package See README.md for instructions on how to compile RAREMETAL for your environment. It should be possible to compile in Mac OS and Linux can be downloaded here: [[Media:CYGWIN64_raremetalenvironments.0.4.9.tgz ‎|You will need '''Cmake''' and '''for Cygwin64 in WindowsCget''']]available.
* The source Since version 4.13.6, RAREMETALWORKER and RAREMETAL are distributed within the same package for Linux can in this repository. More information on changes may be downloaded here: [found at our [Mediahttps:MINGW_raremetal//github.0.4com/statgen/raremetal/releases releases page].9.tgz ‎|'''for MinGW in Windows''']]
For binary executables, we only distribute the one for Linux. For the other platforms, we recommend you build from source code that can be downloaded from above. * The binary of RAREMETALWORKER to run on Linux can also be downloaded here: [[Media:RMW.binary.0.4.9.tgz|'''RAREMETALWORKER BINARY for Linux''']]* If you prefer to start from the source files, you can start from decompress the package using the following command: tar xvf Raremetalworker.0.4.9.tgz* For UM CSG cluster users, no installation is needed. It is available at /net/fantasia/home/sfengsph/code/Rare-Metal/RareMetalWorker/bin/raremetalworker===SCRIPTS===
== How to Compile ==Calculating Odds Ratio from RAREMETALWORKER output====* Go If you want to /RareMetalWorker_0estimate '''Odds Ratios''' of variants analyzed by RAREMETALWORKER, the script [[Media:CalculateOddsRatio.4tgz|'''calculateOddsRatio.9/RareMetalWorker/src and use the following command: make* If pl''']] can help you prefer augment RAREMETALWORKER output with estimated odds ratio to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirementslast columnFor compiling questions, please go to [http://genome*The script can also be found in the RAREMETAL package 4.sph13.umich.edu/wiki/RAREMETAL_FAQ 6 and later, under directory ''' FAQraremetal/script/calculateOddsRatio.pl'''] for more information.
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