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RAREMETAL DOWNLOAD & BUILD

1,380 bytes removed, 12:44, 14 March 2019
Release 4.15.0; simplify release notes to point to self-contained repository.
[[Category:RAREMETAL]]
[[Category:RAREMETALWORKER]]
== Useful Wiki Pages ==
There are several pages in this Wiki that may be useful to RAREMETALWORKER users. Here are links to key pages:
* The [[RAREMETALWORKER | '''RAREMETALWORKER documentation''']]
* The [[RAREMETAL_Documentation | '''RAREMETAL documentation''']]
* The [[RAREMETAL FAQ | '''FAQ''']]
* The [[RAREMETAL_Change_Log | '''Change Log''']]
== Where to Download =GitHub===
We have tested our All source code package is available on several platforms, including Linux/Ubuntu, Linux/Debian, Linux/RedHat, Linux/CentOS, Mac OS X 10.8.From version 4.9, RAREMETALWORKER and RAREMETAL source code are distributed within the same package. For source code for each platform, please go to the followingGitHub:
* [[Mediahttps:LINUX_raremetal//github.0.4.9.tgz ‎|'''for Linux''']] com/statgen/Raremetal
* [[Media:MAC_raremetalSee README.0md for instructions on how to compile RAREMETAL for your environment.4It should be possible to compile in Mac OS and Linux environments.9.tgz ‎|You will need '''Cmake''' and '''for MAC OS XCget''']]available.
Since version 4.13.6, RAREMETALWORKER and RAREMETAL are distributed within the same package in this repository. More information on changes may be found at our [https://github.com/statgen/raremetal/releases releases page].
===SCRIPTS===
For binary executables, we only distribute the one for Linux. For the other platforms, we recommend you build ====Calculating Odds Ratio from source code that can be downloaded from above. The binary of RAREMETALWORKER to run on Linux can also be downloaded here: output====*[[Media:RMW.binary.0.4.9.tgz|If you want to estimate '''RAREMETALWORKER executable for LinuxOdds Ratios''']]*of variants analyzed by RAREMETALWORKER, the script [[Media:raremetal.binary.0.4.9CalculateOddsRatio.tgz|'''RAREMETAL executable for LinuxcalculateOddsRatio.pl''']] == How can help you augment RAREMETALWORKER output with estimated odds ratio to Compile == * gfortran is necessary to build RAREMETAL. If your system does not have it yet, please go to [http://gcc.gnuthe last column.org/wiki/GFortranBinaries '''GNU gfortran'''] for download. * If you choose to build from the source files, you could start from decompress The script can also be found in the RAREMETAL package using the following command: prompt> tar xvf LINUX_raremetal.0.4.913.tgz prompt> cd raremetal_0.4.9 * If you prefer to build two tools all at once6 and later, then do the following: prompt> cd raremetal prompt> make #This builds RAREMETAL and RAREMETALWORKER under bin/ directory.  * If you prefer to build individual tool: prompt> cd raremetal/raremetalworker/src prompt> make #This will build RAREMETALWORKER under raremetal/bin/ directory.  prompt> cd raremetal/raremetal/src prompt> make #This will build RAREMETAL under '''raremetal/binscript/ directorycalculateOddsRatio* If your compiler is adaptable to openmp (parallel computing), then use the following to build RAREMETALWORKER that allows parallel computing. For more about openmp, please refer to [http://openmp.org/wp/openmp-compilers/ openMP]. prompt> cd raremetal/raremetalworker/src prompt> make openmp #This will build RAREMETALWORKER under raremetal/bin/ directory. * If you prefer to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirements. ==FAQ== For compiling questions, please go to [http://genome.sph.umich.edu/wiki/RAREMETAL_FAQ pl''' FAQ'''] for more information.
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