Changes

== Where to Download =GitHub===

We have tested our All source code package is available on several platforms, including Linux/Ubuntu, Linux/Debian, Linux/RedHat, Linux/CentOS, Mac OS X 10.8, and MinGW for Windows.From version 4.9, RAREMETALWORKER and RAREMETAL source code are distributed within the same package. For source code for each platform, please go to the followingGitHub:

* [[Mediahttps:LINUX_raremetal//github.0.4.9.tgz ‎|'''for Linux''']] com/statgen/Raremetal

* [[Media:MAC_raremetalSee README.0md for instructions on how to compile RAREMETAL for your environment.4It should be possible to compile in Mac OS and Linux environments.9.tgz ‎|You will need '''Cmake''' and '''for MAC OS XCget''']]available.

* [[Media:MINGW_raremetalSince version 4.013.46, RAREMETALWORKER and RAREMETAL are distributed within the same package in this repository.9More information on changes may be found at our [https://github.tgz ‎|'''for MinGW for Windows''']com/statgen/raremetal/releases releases page].

====Calculating Odds Ratio from RAREMETALWORKER output====The executables for RAREMETAL and RAREMETALWORKER can be downloaded in the following. *If these don't work on your platform, you might have want to build from source code which can be downloaded above.*[[Media:linux_executables.0.4.9.tgz|estimate '''for LinuxOdds Ratios''']]*of variants analyzed by RAREMETALWORKER, the script [[Media:cygwin64_executables.0.4.9CalculateOddsRatio.tgz|'''CygWin64 for Windows''']]*[[Media:mingw_exe.0.4.9calculateOddsRatio.tgz|''' MinGW for Windowspl''']] == How can help you augment RAREMETALWORKER output with estimated odds ratio to Compile == * gfortran is necessary to build RAREMETAL. If your system does not have it yet, please go to [http://gcc.gnuthe last column.org/wiki/GFortranBinaries '''GNU gfortran'''] for download. * If you choose to build from the source files, you could start from decompress The script can also be found in the RAREMETAL package using the following command: prompt> tar xvf LINUX_raremetal.0.4.913.tgz prompt> cd raremetal_0.4.9 * If you prefer to build two tools all at once6 and later, then do the following: prompt> cd raremetal prompt> make #This builds RAREMETAL and RAREMETALWORKER under bin/ directory.  * If you prefer to build individual tool: prompt> cd '''raremetal/raremetalworkerscript/src prompt> make #This will build RAREMETALWORKER under raremetal/bin/ directorycalculateOddsRatio.  prompt> cd raremetal/raremetal/src prompt> make #This will build RAREMETAL under raremetal/bin/ directory. * If your compiler is adaptable to openmp (parallel computing), then use the following to build RAREMETALWORKER that allows parallel computing. For more about openmp, please refer to [http://openmp.org/wp/openmp-compilers/ openMP]. prompt> cd raremetal/raremetalworker/src prompt> make openmp #This will build RAREMETALWORKER under raremetal/bin/ directory. * If you prefer to use the binary file downloaded above, then no compiling is needed, but it is not guaranteed to work due to system and library requirements. ==FAQ== For compiling questions, please go to [http://genome.sph.umich.edu/wiki/RAREMETAL_FAQ pl''' FAQ'''] for more information.