Changes

From Genome Analysis Wiki
Jump to: navigation, search

BamUtil

861 bytes added, 09:45, 14 May 2014
Releases
[[Media:BamUtilLibStatGen.1.0.1112.tar.gz|BamUtilLibStatGen.1.0.1112.tar.gz‎tgz‎]] - Released 25/2814/2014
'''BamUtilLibStatGen.1.0.11 12 Release Notes'''* Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.1112]] - see link for version updates* Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.1112]] - see link for version updates* Now properly supports Adds regions to mergeBam* Accept 'B,' delimiters for the tags string input in squeeze, revert, & 'f' tags* Cleanup - compile issuesdiff
'''Older Releases'''
*[[Media:BamUtilLibStatGen.1.0.11.tar.gz|BamUtilLibStatGen.1.0.11.tar.gz‎]] - Released 2/28/2014
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]] - see link for version updates
** Contains: [[#Release of just BamUtil (does not include libStatGen)|bamUtil version 1.0.11]] - see link for version updates
** Now properly supports 'B' & 'f' tags
** Cleanup - compile issues
 
*[[Media:BamUtilLibStatGen.1.0.10.tar.gz|BamUtilLibStatGen.1.0.10.tar.gz‎]] - Released 1/2/2014
** Contains: [[LibStatGen Download#Official Releases|libStatGen version 1.0.10]] - see link for version updates
To install an official release, unpack the downloaded file (tar xvf), cd into the bamUtil_x.x.x directory and type make all.
* [[Media:BamUtil.1.0.1112.tgz|BamUtil.1.0.1112.tgz‎]] - Released 25/2814/2014 '''BamUtil.1.0.12 Release Notes'''* [[Media:BamUtil.1.0.12.tgz|BamUtil.1.0.12.tgz‎]] - Released 5/14/2014** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.12]]** Update [[BamUtil: mergeBam|mergeBam]]*** Add a regions option** Update to [[BamUtil: squeeze|squeeze]], [[BamUtil: revert|revert]], [[BamUtil: diff|diff]]*** Also accept ',' instead of just ';' as the delimiter in the input tags string. '''Older Releases'''
'''BamUtil.1.0.11 Release Notes'''
* [[Media:BamUtil.1.0.11.tgz|BamUtil.1.0.11.tgz‎]] - Released 2/28/2014
** Requires, but does not include: [[LibStatGen Download#Official Releases|libStatGen version 1.0.11]]
*** Update compatibility with libStatGen due to 'B' & 'f' tag handling updates
** Add tests for 'B' & 'f' tags
 
 
'''Older Releases'''
* [[Media:BamUtil.1.0.10.tar.gz|BamUtil.1.0.10.tar.gz‎]] - Released 1/2/2014

Navigation menu