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*java -jar GenomeAnalysisTK.jar -T LeftAlignAndTrimVariants -R ref.fa --variant in.vcf.gz -o out.vcf.gz
*java -jar GenomeAnalysisTK.jar -T LeftAlignAndTrimVariants -R ref.fa --variant in.vcf.gz -o out.vcf.gz
*vt normalize -r ref.vcf.gz -o out.vcf.gz
*vt normalize -r ref.vcf.gz -o out.vcf.gz
Versions are:
*bcftools v0.2.0-rc8-5-g0e06231 (using htslib 0.2.0-rc8-6-gd49dfa6)
*GATK v3.1-1-g07a4bf8
*vt v0.5
= Maintained by =
= Maintained by =
This page is maintained by [mailto:atks@umich.edu Adrian].
This page is maintained by [mailto:atks@umich.edu Adrian].
