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114 bytes added
, 11:12, 26 May 2014
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− | | GATK's algorithm is documented to work only for biallelic simple indels. The 57 variants were either multiallelic or mixed variants (SNP adjacent to indel). | + | | GATK's algorithm is documented to work only for biallelic simple indels. The 57 variants were either multiallelic or mixed variants (SNP adjacent to indel). 6 biallelic mixed variants that were not left aligned however turned out to be simple indels after left alignment. |
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| | #normalized after vt | | | #normalized after vt |