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SeqShop: Variant Calling and Filtering for SNPs Practical, June 2014 (view source)

No change in size , 11:32, 14 June 2014

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== Goals of This Session ==

* What we want to learn

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** How to generate filtered variant calls for SNPs

** Basic variant call file format (VCF)

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** How to ~~generate filtered~~ variant calls ~~for SNPs~~

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** How to visualize the variant calls to examine the variants at particular genomic positions

** How to evaluate the quality of variant calls

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** How to visualize the variant calls to examine the variants at particular genomic positions

== GotCloud SnpCall Pipeline ==

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