3,045
edits
Changes
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! width="10%"|BAM
! width="10%"|BAM
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| If SO flag is set in the header, fail if the file is not sorted.
| If specified to check sort order (either based on SO flag or user specifies coordinate or query name).
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**Same question for MRNM = “*” and MPOS & ISIZE = 0
**Same question for MRNM = “*” and MPOS & ISIZE = 0
*Comment says: “The name of a pair/read is required to be unique in the SAM file, but one pair/read may appear multiple times in different alignment records, representing multiple or split hits.” - Is there anything here that needs to be validated???
*Comment says: “The name of a pair/read is required to be unique in the SAM file, but one pair/read may appear multiple times in different alignment records, representing multiple or split hits.” - Is there anything here that needs to be validated???
== BamFile Classes ==
== BamFile Classes ==
[[BamFile]]
[[BamFile]]
