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Revision as of 19:42, 16 June 2014
, 19:42, 16 June 2014→Reference Files
=== Reference Files ===
=== Reference Files ===
Reference files can be downloaded with GotCloud or from other sources
Reference files can be downloaded with GotCloud or from other sources.
* For this practical, I already downloaded them for you.
* See [[GotCloud: Genetic Reference and Resource Files]] for more information on downloading/generating reference files
* See [[GotCloud: Genetic Reference and Resource Files]] for more information on downloading/generating reference files
#* hapmap - used as likely true positives for SVM filtering and for generating summary statistics
#* hapmap - used as likely true positives for SVM filtering and for generating summary statistics
#* dbsnp - used for generating summary statistics
#* dbsnp - used for generating summary statistics
We looked at them yesterday, but you can take another look at the chromosome 22 reference files included for this tutorial:
ls ${REF}
<ul>
<div class="mw-collapsible mw-collapsed" style="width:200px">
<li>View Screenshot</li>
<div class="mw-collapsible-content">
[[File:RefDir.png|500px]]
</div>
</div>
</ul>
=== GotCloud Configuration File ===
=== GotCloud Configuration File ===
