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From Genome Analysis Wiki
→Reference Files
#* Contains the reference base for each position of each chromosome
#** Used to compare bases in sequence reads to the reference positions they mapped to
#** Identify Used to identify SNPs/variations in the sequence reads
#* Additional information on the FASTA format: http://en.wikipedia.org/wiki/FASTA_format
# VCF (variant call format) files with chromosomes/positions
