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, 20:56, 16 June 2014
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| == Examining GotCloud Indel Input files == | | == Examining GotCloud Indel Input files == |
| + | The GotCloud Indel caller takes the same inputs as GotCloud snpcall. |
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| + | If you want a reminder, of what they look like, here is a link to the previous tutorial : [[SeqShop:_Variant_Calling_and_Filtering_for_SNPs_Practical#Examining_GotCloud_SnpCall_Input_files|GotCloud SnpCall Input Files]] |
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| == Running GotCloud Indel == | | == Running GotCloud Indel == |
| ${GC}/gotcloud indel --conf ${IN}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000 | | ${GC}/gotcloud indel --conf ${IN}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000 |