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Run GotCloud SnpCall
If you cancelled GotCloud part way through, just rerun your GotCloud command and it will pick up where it left off.
 
If you want to understand more detailed step of GotCloud SNP calling, here is a schematic picture with a little bit more details
 
[[File:Gotcloudoverview.png|600px]]
== Examining GotCloud SnpCall Output ==

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