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46 bytes added
, 10:33, 17 June 2014
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| We perform the same analysis for the failed variants again, the relatively low overlap with known data sets imply a reasonable tradeoff in sensitivity and specificity. | | We perform the same analysis for the failed variants again, the relatively low overlap with known data sets imply a reasonable tradeoff in sensitivity and specificity. |
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− | ${GC}/bin/vt profile_indels -g indel.reference.txt -r hs37d5.fa all.genotypes.bcf -i 22:36000000-37000000 -f "~PASS" | + | ${GC}/bin/vt profile_indels -g ${VTREF}/indel.reference.txt -r ${REF}/human.g1k.v37.chr22.fa ${OUT}/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "~PASS" |
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| data set | | data set |