Changes

SeqShop: Variant Calling and Filtering for INDELs Practical, June 2014 (view source)

51 bytes removed , 14:01, 17 June 2014

Line 459: Line 459:

Results:

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~~1 18293097 . T TCTC . PASS VC=INDEL;AC=263;AF=0.84;AN=314;OLD_VARIANT=1~~:18293100:~~C/CCTC~~

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*The position has changed - it was:

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** 18293100 (as seen after OLD_VARIANT)

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*Now it is

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** 18293097

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[[File:indelNormalize.png|800px]]

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~~The position has changed - it was:~~

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* 18293100 (as seen after OLD_VARIANT)

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~~Now it is~~

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* 18293097

UMICH's algorithm for normalization has been adopted by Petr Danecek in bcftools and is also used in GKNO.

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