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Revision as of 00:02, 18 June 2014
, 00:02, 18 June 2014→Setup your run environment
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View setup.txt
View setup.txt
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export GC=/home/hmkang/seqshop/gotcloud
export IN=/home/hmkang/seqshop/inputs
export REF=/home/hmkang/seqshop/reference/chr22
export VTREF=/home/hmkang/seqshop/reference/vtRef
export SV=/home/hmkang/seqshop/reference/svtoolkit
export EXT=/home/hmkang/seqshop/external
export OUT=~/out
mkdir -p ${OUT}
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== Examining GotCloud/GenomeSTRiP Input files ==
== Examining GotCloud/GenomeSTRiP Input files ==
