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, 01:20, 18 June 2014→Why use GenomeSTRiP?
=== Why use GenomeSTRiP?===
=== Why use GenomeSTRiP?===
# GenomeSTRiP is a mature software for detecting and genotyping large deletions (and duplications soon to be implemented). In 1000 Genomes, GenomeSTRiP showed near best performance in most evaluation metrics.
# GenomeSTRiP is a mature software for detecting and genotyping large deletions (and duplications soon to be implemented). In 1000 Genomes, GenomeSTRiP was demonstrated as one of the top-performing SV caller in most evaluation metrics.
# GenomeSTRiP is a great tool to integrate across multiple structural variant calls. When multiple structural variant calls exists, all the other variants can be genotyped and filtered with GenomeSTRiP, and that is how 1000 Genomes structural variant call sets were made.
# GenomeSTRiP is a great tool to integrate across multiple structural variant calls. When multiple structural variant calls exists, all the other variants can be genotyped and filtered with GenomeSTRiP, and that is how 1000 Genomes structural variant call sets were made.
# Currently, GenomeSTRiP only allows calling large deletions, but duplicate calling pipeline is under way.
=== Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself? ===
=== Why do we use GotCloud/GenomeSTRiP pipeline instead of directly using GenomeSTRiP itself? ===
