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SeqShop: Estimates of Genetic Ancestry Practical, June 2014 (view source)

Revision as of 13:16, 18 June 2014

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== Introduction ==
 
== Introduction ==
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See the LASER-tutorial.pdf for an introduction of the LASER analysis workflow, input/output file formats, and usage of the LASER software.
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See the [[Media:LASER-tutorial.pdf|tutorial slides]] for an introduction of the LASER analysis workflow, input/output file formats, and usage of the LASER software.
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This page provides step-by-step command lines for estimating ancestry of 6 targeted sequencing samples (2 HapMap trios) in a principal component space generated using genome-wide SNP data from the Human Genome Diversity Project (HGDP).
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The main purpose of this page is to provide step-by-step command lines for estimating ancestry of 6 targeted sequencing samples (2 HapMap trios) in a principal component space generated using genome-wide SNP data from the Human Genome Diversity Project (HGDP).
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== LASER workflow ==
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[[File:LASER-workflow.png|thumb|center|alt=LASER workflow|400px|LASER workflow]]
    
== Getting started ==
 
== Getting started ==
Chaolong Wang
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