Changes

SeqShop: Estimates of Genetic Ancestry Practical, June 2014 (view source)

765 bytes added , 20:08, 18 June 2014

Line 97: Line 97:

cp hapmap_trios.1-3.SeqPC.coord hapmap_trios.SeqPC.coord

more +2 hapmap_trios.4-6.SeqPC.coord >> hapmap_trios.SeqPC.coord

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View the results:

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less -S hapmap_trios.SeqPC.coord

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The results should look like below:

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popID indivID L1 Ci K t PC1 PC2 PC3 PC4

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YRI NA19238 78386 0.170864 20 0.999688 467.989 -210.294 -14.1729 -14.4204

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CEU NA12892 85486 0.185973 20 0.999723 10.796 199.095 -9.90387 -21.4534

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CEU NA12891 87588 0.190442 20 0.99973 2.04224 196.07 -19.5705 -12.8022

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CEU NA12878 83213 0.181748 20 0.999711 4.34591 199.861 -12.4825 -22.6281

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YRI NA19239 87564 0.193424 20 0.999734 474.464 -215.96 -9.02921 -19.7372

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YRI NA19240 95866 0.213874 20 0.999748 469.914 -214.94 -14.9923 -13.6559

Step 3: Plot results using R

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edits