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Revision as of 21:31, 18 June 2014
, 21:31, 18 June 2014→Estimating ancestry coordinates using LASER
# ./LASER-2.01/laser -g $HGDP/HGDP_938.geno -pca 1 -k 30 -o HGDP_938
# ./LASER-2.01/laser -g $HGDP/HGDP_938.geno -pca 1 -k 30 -o HGDP_938
The above command takes about 20 mins to finish.
The above command takes ~20 minutes to finish.
We will skip this step, and use a set of reference ancestry coordinates that have been generated in the file $HGDP/HGDP_938.RefPC.coord.
We will skip this step, and use a set of reference ancestry coordinates that have been generated in the file $HGDP/HGDP_938.RefPC.coord.
View the reference coordinates:
View the reference coordinates:
