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Revision as of 21:41, 18 June 2014
, 21:41, 18 June 2014→Preparing input files for LASER
== Preparing input files for LASER ==
== Preparing input files for LASER ==
Step 0: vcf --> geno
= Step 0: vcf --> geno =
This step prepares the reference panel by converting a VCF genotype file to a GENO file. We will skip this step and use a ready-to-use HGDP reference panel. A typical command to run the vcf2geno tool is given in the file "./LASER-2.01/vcf2geno/cmd.sh":
This step prepares the reference panel by converting a VCF genotype file to a GENO file. We will skip this step and use a ready-to-use HGDP reference panel. A typical command to run the vcf2geno tool is given in the file "./LASER-2.01/vcf2geno/cmd.sh":
