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Running GotCloud Genotype Refinement
=== Running GotCloud Genotype Refinement ===
Since everything is setup, just run the following command (very similar to snpcall).
${GC}/gotcloud ldrefine --conf ${INSS}/gotcloud.conf --numjobs 2 --region 22:36000000-37000000--base_prefix ${SS} --outdir ${OUT}
* Beagle will take about 2-3 minutes to complete

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