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Revision as of 10:21, 30 June 2014
, 10:21, 30 June 2014→Running GotCloud/GenomeSTRiP Metadata Pipeline
In principle, the metadata can be created from the input BAM files by running the following command
In principle, the metadata can be created from the input BAM files by running the following command
time perl $GC/bin/genomestrip.pl -run-metadata --out $OUT/sv --conf $IN/gotcloud.conf --numjobs 2
time perl ${SS}/svtoolkit/bin/genomestrip.pl -run-metadata --conf ${SS}/gotcloud.conf --numjobs 2 --base-prefix ${SS} --outdir ${OUT}
'''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take ~50 minutes to finish'''.
'''WAIT!!!!! DO NOT RUN THIS COMMAND, because it will take ~50 minutes to finish'''.
