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Genotype Refinement Output
<li><code>beagle</code> directory : Beagle output</li>
<li><code>thunder</code> directory : Thunder output</li>
<li><code>umake.beagle.conf*</code> : Configuration values Contain the configuration & steps used for GotCloud beagle</li><li><code>umake.beagle.Makefile</code> : GNU makefile for commands run as part of GotCloud beagle</li><li><code>umake.beagle.Makefile.log</code> : Log of the in GotCloud beagle run</li>
<li><code>umake.thunder.*</code> files : Contain the configuration & steps used in GotCloud thunder</li>
</ul>

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