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Famrvtest

579 bytes removed, 14:15, 20 August 2014
Group Info from Annotated VCF File
PLEKHN1 1:901922_G/A 1:901923_C/A 1:902088_G/A 1:902128_C/T 1:902133_C/G 1:902176_C/T 1:905669_C/G
HES4 1:934735_A/C 1:934770_G/A 1:934801_C/T 1:935085_G/A 1:935089_C/G
 
===Group Info from Annotated VCF File===
If --groupFile option is '''NOT''' specified, ''''famrvtest''' will look for an annotated vcf file as blue print for variants to group. Users are also allowed to generate a vcf file based on the superset of variants from pooled samples, and annotate outside RAREMETAL. Then, annotated vcf file can be used as input for RAREMETAL for gene-level meta-analysis, or group files can be generated based on the annotated vcf file. Detailed description of these options are [[Rare-Metal#Group_Rare_Variants_from_Annotated_VCF|'''available''']].
== Example Command Line ==
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