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Variant classification

122 bytes removed, 13:27, 5 September 2014
Output
>=5 alleles : 21 (0.35) [24/68] (0.68) [25/37]<br>
no. of MNP/Clumped : 61175
2 alleles : 60617 (1.68) [84410/50220] (-nan) [0/0] 3 alleles : 549 (1.23) [1777/1449] (-nan) [0/0] 4 alleles : 8 (1.43) [53/37] (-nan) [0/0] >=5 alleles : 1 (1.00) [5/5] (-nan) [0/0] <br>
no. of SNP/MNP/Clumped : 290
3 alleles : 282 (1.35) [665/494] (-nan) [0/0] 4 alleles : 8 (0.57) [13/23] (-nan) [0/0] <br>
no. of Indel/Clumped : 27638
2 alleles : 25971 (0.65) [31435/48526] (0.79) [11444/14527]
====== Other useful categories ===== <br>
no. of Block Substitutions : 184751 #equivalent to categories with allele lengths that are the same.
2 alleles : 182466 (1.60) [236793/148036] (-nan) [0/0] 3 alleles : 2247 (1.28) [4544/3538] (-nan) [0/0] 4 alleles : 34 (1.16) [109/94] (-nan) [0/0] >=5 alleles : 4 (0.76) [13/17] (-nan) [0/0] <br>
no. of Complex Substitutions : 159298 #equivalent to categories not including simple SNPs, Block Substitutions and Simple Indels
2 alleles : 81508 (0.61) [60312/98113] (0.66) [32479/49029]
1,102
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