1,102
edits
Changes
From Genome Analysis Wiki
Jump to navigationJump to searchVariant classification (view source)
Revision as of 18:14, 5 September 2014
, 18:14, 5 September 2014→Complex Multiallelic Examples
SNP|MNP<br>
SNP|MNP<br>
REF AT
REF AT
ALT GT #SNP, 1 ts
ALT GT #SNP, 1 ts
ALT AC #SNP, 1 ts
ALT AC #SNP, 1 ts
#since all the alleles are of the sample length, classified as MNP too.
#since all the alleles are of the sample length, classified as MNP too.
SNP|MNP|CLUMPED<br>
SNP|MNP|CLUMPED<br>
REF ATTTG
REF ATTTG
ALT GTTTC #CLUMPED, 1 ts, 1 tv
ALT GTTTC #CLUMPED, 1 ts, 1 tv
ALT ATTTC #SNP, 1 tv
ALT ATTTC #SNP, 1 tv
#since all the alleles are of the sample length, classified as MNP too.
#since all the alleles are of the sample length, classified as MNP too.
SNP|MNP|INDEL<br>
SNP|MNP|INDEL<br>
REF GT
REF GT
ALT CT #SNP, 1 tv
ALT CT #SNP, 1 tv
ALT AG #MNP, 2 tv
ALT AG #MNP, 2 tv
ALT GTT #INDEL, 1 ins
ALT GTT #INDEL, 1 ins
SNP|MNP|INDEL|CLUMPED<br>
SNP|MNP|INDEL|CLUMPED<br>
REF GTTT
REF GTTT
ALT CG #MNP|INDEL, 2 tv, 1 del
ALT CG #MNP|INDEL, 2 tv, 1 del
ALT AG #MNP|INDEL, 1 ts, 1 tv
ALT AG #MNP|INDEL, 1 ts, 1 tv
ALT GTGTG #SNP|INDEL|CLUMPED, 1 tv
ALT GTGTG #SNP|INDEL|CLUMPED, 1 tv
== Weird Examples ==
== Weird Examples ==
