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Variant classification

28 bytes added, 17:33, 5 September 2014
Classification Procedure
: else, align strictly on 5' end and count transitions and transversions.
: b. If all overlapping nucleotides do not match, assign SNP if shorter allele is of length 1 and MNP if not.
: else assign CLUMPED
;4. If all alleles are the same length, assign MNP to the entire variant.

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