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* MOSIX
* MOSIX
* SGE (Sun Grid Engine)
* SGE (Sun Grid Engine)
** Used by StarCluster
* SLURM
* SLURM
* PBS (Portable Batch System)
You can specify the type of cluster with the option '''-batchtype'''. In addition you can pass options
You can specify the type of cluster with the option '''-batchtype'''. In addition you can pass options
to that cluster system with the option '''-batchopt'''.
to that cluster system with the option '''-batchopt'''.
* Alternatively, you can set them using BATCH_TYPE and BATCH_OPTS in the configuration file.
For example, here are examples of invocations of the aligner using these batch systems:
For example, here are examples of invocations of the aligner using these batch systems:
