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Revision as of 23:51, 20 April 2010
, 23:51, 20 April 2010→Generate Variant Calls
; Annotate Overall Variant Characteristics
; Annotate Overall Variant Characteristics
: Calculate overall ratio of transitions to transversions, separately for coding and non-coding variants. Within coding variants, analyse synonymous and non-synonymous variants separately.
: Calculate overall ratio of transitions to transversions, separately for coding and non-coding variants. Within coding variants, analyse synonymous and non-synonymous variants separately.
; CpG Sites
: Calculate the rate of per base pair heterozygosity at potential CpG sites and compare this to other sites.
; Tabulate for Each Sample
; Tabulate for Each Sample
