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, 12:47, 23 October 2014
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| * Already included with default reference files | | * Already included with default reference files |
| * If you are using your own reference files, you will need to be sure to create these files | | * If you are using your own reference files, you will need to be sure to create these files |
− | ** Be sure to create these additional files using the version of tool being run by GotCloud (by default they are in the gotcloud/bin/ directory) | + | ** Be sure to create these additional files using the version of tool being run by GotCloud (by default they are in the <code>gotcloud/bin/</code> directory) |
− | ** In the commands below, replace ref.fa with the path/name of the reference fasta file | + | ** In the commands below, replace <code>ref.fa</code> with the path/name of the reference fasta file |
| {| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1" | | {| class="wikitable" style="margin: 1em 1em 1em 0; background-color: #f9f9f9; border: 1px #aaa solid; border-collapse: collapse;" border="1" |
| ! Pipeline !! Step !! Required Extensions !! Command to Create !! More Information | | ! Pipeline !! Step !! Required Extensions !! Command to Create !! More Information |