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'''MaCH''' (MArkov Chain Haplotyping) is a software for phasing and genotype imputation.
'''MaCH''' (MArkov Chain Haplotyping) is a Hidden Markov Model (HMM) based haplotyper that reconstructs haplotypes from genotypes of unrelated individuals. Three primary utilities of MaCH are (1) to resolve haplotypes from diploid genotypes; (2) impute missing genotypes; and (3) perform disease mapping analysis.
== Options ==
== Options ==
Input Files:
--datfile
Marker information file as described in section 3.
--pedfile
Pedigree file as described in section 3.
== FAQ ==
== FAQ ==
