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121 bytes added
, 15:14, 6 December 2014
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| </div> | | </div> |
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− | ${GC}/bin/vt profile_indels -g ${OUT}/indel.reference.txt -r ${SS}/ref22/human.g1k.v37.chr22.fa ${OUT}/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS" | + | ${GC}/bin/vt profile_indels -g ${SS}/ref22/indel.reference.txt -r ${SS}/ref22/human.g1k.v37.chr22.fa ${OUT}/indel/final/all.genotypes.vcf.gz -i 22:36000000-37000000 -f "PASS" |
− | | + | * When running outside the workshop, use ${OUT}/indel.reference.txt instead of ${SS}/ref22/indel.reference.txt |
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| data set | | data set |