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, 19:46, 7 December 2014
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| <li>That's ok, we will use the <code>--base_prefix ${SS}</code> command-line option to prefix the BAM paths</li> | | <li>That's ok, we will use the <code>--base_prefix ${SS}</code> command-line option to prefix the BAM paths</li> |
| <li>Alternatively, we could have set BAM_PREFIX in <code>gotcloud.conf</code> to the path to the BAMs | | <li>Alternatively, we could have set BAM_PREFIX in <code>gotcloud.conf</code> to the path to the BAMs |
− | <pre>BAM_PREFIX = /home/username/seqshop/example</pre> </li> | + | <pre>BAM_PREFIX = /net/seqshop-server/home/mktrost/seqshop/example</pre> </li> |
| <ul> | | <ul> |
| <li>NOTE: the conf file can't interpret ${SS} environment variables or '~', so you would have to specify the full path</li> | | <li>NOTE: the conf file can't interpret ${SS} environment variables or '~', so you would have to specify the full path</li> |
− | <li>We just used the command-line option for this tutorial since this path will vary by user.</li> | + | <li>We just used the command-line option for this tutorial since this path will vary by user when running outside the workshop.</li> |
| </ul> | | </ul> |
| </div> | | </div> |